Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015857748.1_cds_XP_016513525.1_26061
CDS Infomation

[gene=LOC107830473] [db_xref=GeneID:107830473] [protein=putative E3 ubiquitin-protein ligase RING1a] [protein_id=XP_016513525.1] [location=join(1183..1303,1461..1503,6221..6279,7338..7419,7501..7621,7716..7757,8159..8659,9108..9215,9317..9529,9840..9905)] [gbkey=CDS]
Sequence

ATGCCTGCTCAAAAGCGTTCGTACGACACTCCTCCTACTCCTCCTCCGCCACCGGACGAA
AAAAACGATGATTCGTTACAAGGTAATCAAAATCACGACGAAGAAGCCTACGACAGCGCC
GATTCGGATGGAACTACTTGTTCGAGCGGCGGCGAGAAAGATGAATTTATCACTGTGAGG
CTTTCAGAAATTCGCAAAGAAGTACAGTGCCCTATATGTTTAGGCATTATTCGAAAGACC
AGAACAGTTATGGAATGCTTGCATCGCTTTTGTAGAGAATGCATTGACAAATCTATGCGA
ATGGGGAACAATGAGTGTCCCGCTTGTCGTACCCACTGTGCTAGTCGCCGTTCTCTGAGA
GATGATCCGAACTATGATGCTCTAATTTCCCTTCTATATCCAGATATTGATAAATATGAA
GAGGAGGAATTGGCTTTTCATGAAGAGGAGAAAGCTCGGAATAAGCAGATACAAGCTTCA
ATTGCACAGACATTACGGCGACAATCAGAAGCACTGGGAAGGAAACGGACCGCTAGAGCT
ACAGCAGCAGCTTTTGCGAGGAGATCTCAGGGACGCTATCGAAGTTTAAGGGGAAGAAGA
AATTTTCAGGGTGCTGAACACCAGATATCTGATGAGGAGGAAGATGGTAATCATGATATT
GGCAAAGATTCTTCCTCTGCTGATGATCGCTCGATAGAAGTCAAACCAAAACGGTACAAA
AAGAGGGGAGGACGGCCTTCTCAGGCTTCAGGAGCTAGTGACGAAAATGATGCAGAAATA
AACCAAGAATCACTTGGTGCATGTAGTGGACTTATTCGCTGTTCAGAGATTCTTGCCTGG
GGAAAAGGTGGCCTGCGAAGTAACACGAGACACGGGGGTCTTGGGGGAGGCACTGGCAAA
TTTTCCAGGAATAGCCGAGTCTCAAAGCTAATTGATTGTCTTTCTTGTTCAGATGAAAAT
GAAGAGAAGTTGGATGTCAGACTGAAGCTTGTTCCCATATCTGAAGAGGATATCCCAAGT
TTGCAACGACCTTACCTTTGCTGCCGGCCCACTATGGAAGTTAAACATTTGAGCCAATAT
GTAGCACAGCAAACTTCCATAGAAGTCGGCAAAATCGACATAGTGCTGATAAAAGAGCTT
AACCGCAGTGACAACTCTTCAAGTTCTGATATCATGGCTATTTCCAAACTCATTGTTGGA
GATCCTTGTATGATTGAAATCCATAAGGTAAACGAGCATCAGACATTAGGGGAAATCCAA
GAGATGTGTGGTTTTAGCCAGCGTAATCTGATCTTAGCATACGGATGCAAGTCAAAGAAT
AGGACAGACCATGATGAAGGGAAGGTGACCGTGTAA

Peptide Sequence

PEP ID

XP_016513525.1
PEP Infomation

PREDICTED: putative E3 ubiquitin-protein ligase RING1a [Nicotiana tabacum]
Sequence

MPAQKRSYDTPPTPPPPPDEKNDDSLQGNQNHDEEAYDSADSDGTTCSSGGEKDEFITVR
LSEIRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLR
DDPNYDALISLLYPDIDKYEEEELAFHEEEKARNKQIQASIAQTLRRQSEALGRKRTARA
TAAAFARRSQGRYRSLRGRRNFQGAEHQISDEEEDGNHDIGKDSSSADDRSIEVKPKRYK
KRGGRPSQASGASDENDAEINQESLGACSGLIRCSEILAWGKGGLRSNTRHGGLGGGTGK
FSRNSRVSKLIDCLSCSDENEEKLDVRLKLVPISEEDIPSLQRPYLCCRPTMEVKHLSQY
VAQQTSIEVGKIDIVLIKELNRSDNSSSSDIMAISKLIVGDPCMIEIHKVNEHQTLGEIQ
EMCGFSQRNLILAYGCKSKNRTDHDEGKVTV

Transcript Sequence

Gene sequence data has not been registered.